[Molecuilder-devel] [SCM] MoleCuilder branch GUI_TesselatedLargeMolecules updated. v1.4.9-31-g71ec5f1
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The branch, GUI_TesselatedLargeMolecules has been updated
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- Log -----------------------------------------------------------------
commit 71ec5f12bad3f9ca07448c022d49cd6cf4cba571
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date: Sat Dec 13 09:09:40 2014 +0100
tempcommit: SelectionBox is drawn again when molecule is fully shown.
- SelectionBox is not correctly updated.
commit 94444b5f4bd072f57b46989474a7407caf6a75c4
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date: Fri Dec 12 21:38:29 2014 +0100
FIX: Bonds from new molecules are instantiated, too.
- when filling in molecules, initially empty molecules are created and atoms
added lateron. Added atoms would not add their already present atoms but
only new ones via an Observer update. Now when an atom is inserted, all
bonds if any are added.
commit 98e539ae2870958646d3af1faf75d84de2de0941
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date: Fri Dec 12 21:05:41 2014 +0100
tempcommit: New update scheme for QtMoleculeList requires changing flag to prevent VisibilityChanged() trigger.
commit 475d81cdae13f55cb3ab1a22ec9ea5784cec122d
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date: Fri Dec 12 20:43:05 2014 +0100
tempcommit: Extracted add/removeItem in QtMoleculeList, no more complete refilling on update.
- this is unfinished as we can't find the item to a molecule that is about to
be removed.
commit 655f68de8bef7d0db47490198f9ddcc88ed29267
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date: Fri Dec 12 19:41:27 2014 +0100
Undo/Redobuttons are grayed out when respective Action not possible.
commit e84c92bda5070ea442b1bbec14dafcf8fc69587f
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date: Fri Dec 12 19:22:55 2014 +0100
Extracted removeAtomsinMolecule from molecule class.
- this is necessary since World will automatically remove empty molecules.
commit 5a93de00c8f02283320b822aec6504f20d0822c3
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date: Fri Dec 12 19:13:18 2014 +0100
tempcommit: Fixes due to molecules being automatically removed.
commit 3d33f4c3066f85982c6ed23a84bd8e9693f27cdb
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date: Fri Dec 12 19:03:06 2014 +0100
tempcommit: Fixes to RemoveAction.
commit c5a4e7f18f1f16913e26e27f9a919f933ee9e468
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date: Fri Dec 12 18:50:58 2014 +0100
tempcommit: Fixes to World destroying empty molecules.
commit 5df432a62c45c377195b2c1799e3122e1f2a25ee
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date: Fri Dec 12 18:43:03 2014 +0100
tempcommit: Fixes to extension of MoleculeIdAction.
commit 50c306d9853a916d7ca381740c48dcd24e72f602
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date: Fri Dec 12 18:29:46 2014 +0100
Added new RemoveAction for molecules.
- also add regression test.
commit f84ff5bcec8b1dfcb0149eae79795d53ffa866ea
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date: Fri Dec 12 09:28:58 2014 +0100
Extended UndoRedoHelpers by AddingMultipleMoleculesfromAtomicInfo.
commit 0d1c15e4d7f98048440c8168616f255654632a55
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date: Fri Dec 12 09:28:30 2014 +0100
Extended selection action for Molecule ids to multiple ids.
-----------------------------------------------------------------------
Summary of changes:
src/Actions/ActionQueue.cpp | 10 +
src/Actions/ActionQueue.hpp | 12 +
src/Actions/GlobalListOfActions.hpp | 1 +
src/Actions/Makefile.am | 3 +
src/Actions/MoleculeAction/RemoveAction.cpp | 122 +++++++++++
.../RemoveAction.def} | 24 ++-
.../RemoveAction.hpp | 8 +-
.../SelectionAction/Atoms/NotAtomByIdAction.def | 1 -
.../Molecules/MoleculeByIdAction.cpp | 65 +++++--
.../Molecules/MoleculeByIdAction.def | 16 +-
.../Molecules/NotMoleculeByIdAction.cpp | 64 +++++--
.../Molecules/NotMoleculeByIdAction.def | 16 +-
src/Actions/UndoRedoHelpers.cpp | 39 ++++-
src/Actions/UndoRedoHelpers.hpp | 9 +-
src/Actions/WorldAction/RepeatBoxAction.cpp | 8 +-
src/Fragmentation/Exporters/ExportGraph.cpp | 3 +-
src/Graph/unittests/AdjacencyListUnitTest.cpp | 3 +-
src/MoleculeLeafClass.cpp | 7 +-
.../Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp | 77 +++++---
.../Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp | 6 +
src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp | 10 +-
src/UIElements/Views/Qt4/QtMoleculeList.cpp | 216 +++++++++++++-------
src/UIElements/Views/Qt4/QtMoleculeList.hpp | 6 +
src/UIElements/Views/Qt4/QtToolBar.cpp | 59 +++++-
src/UIElements/Views/Qt4/QtToolBar.hpp | 19 ++-
.../Views/Qt4/QtToolBar_QtFavoriteActions.cpp | 1 -
src/World.cpp | 1 +
src/molecule.cpp | 6 +-
src/molecule.hpp | 7 +-
tests/regression/Makefile.am | 1 +
.../Molecules/Remove/post/id0_2_missing.pdb | 38 ++++
.../regression/Molecules/Remove/post/water_box.pdb | 44 ++++
.../regression/Molecules/Remove/pre/water_box.pdb | 50 +++++
.../testsuite-molecules-remove.at} | 48 +++--
tests/regression/Molecules/testsuite-molecules.at | 3 +
.../post/{id4_missing.xyz => id2_4_missing.xyz} | 5 +-
.../post/{water_id4.xyz => water_id2_4.xyz} | 5 +-
.../testsuite-selection-select-molecule-by-id.at | 10 +-
.../testsuite-selection-unselect-molecule-by-id.at | 10 +-
39 files changed, 812 insertions(+), 221 deletions(-)
create mode 100644 src/Actions/MoleculeAction/RemoveAction.cpp
copy src/Actions/{GraphAction/DestroyAdjacencyAction.def => MoleculeAction/RemoveAction.def} (59%)
copy src/Actions/{AtomAction => MoleculeAction}/RemoveAction.hpp (61%)
create mode 100644 tests/regression/Molecules/Remove/post/id0_2_missing.pdb
create mode 100644 tests/regression/Molecules/Remove/post/water_box.pdb
create mode 100644 tests/regression/Molecules/Remove/pre/water_box.pdb
copy tests/regression/Molecules/{ChangeBondAngle/testsuite-molecules-change-bond-angle.at => Remove/testsuite-molecules-remove.at} (53%)
rename tests/regression/Selection/Molecules/MoleculeById/post/{id4_missing.xyz => id2_4_missing.xyz} (99%)
rename tests/regression/Selection/Molecules/MoleculeById/post/{water_id4.xyz => water_id2_4.xyz} (65%)
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