[Molecuilder-devel] [SCM] MoleCuilder annotated tag v1.4.5 created. v1.4.5

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The annotated tag, v1.4.5 has been created
        at  f4195122f0bf78a3cfc496bb2e10204e000c41e1 (tag)
   tagging  7e3e41e91a0984ec94e5f979ff3e508719937876 (commit)
  replaces  v1.4.4
 tagged by  Frederik Heber
        on  Mon May 26 14:22:56 2014 +0200

- Log -----------------------------------------------------------------
A lot of fixes, especially muted (most) compilation warnings.
ActionThread introduction (Actions contained in queue with own thread).
FragmentationAutomation action is now a process.
Userguide for the true user (not developer) with explanation of all actions.

This version contains the following branches:
7e3e41e Candidate_v1.4.5 (setting version)
6029a66 Docbook_Userguide (adding docbook userguide, compiled via Makefile)
caece42 DocumentationUpdate (complete update of all stuff in documentation)
74459a0 ActionQueue_thread (ActionQueue now has its own thread where all
        actions are executed. As the rest of the code is not fully prepared,
        making this feature rather unstable, it is switched off by default for
        the moment).
c09f94c	FragmentationProcess (FragmentationAutomation is now a process)
d76d652	Fix_all_compilation_warnings (as the name says ...)

Frederik Heber (34):
      FIX: Test on skipping load/store session from python script was wrong way round.
      XmlParser::load() now gives each different charge a different element.
      FIX: CyclicStructureAnalysis falsely used DFS, skipped some cycles.
      FIX: MolecularDynamicsAction now prepares normally not inside performCall().
      FIX: SubgraphDissectionAction is now a MakroAction, fixed store-session.
      FIX: MolecularDynamicsAction needs to clear fragment results after integration.
      FIX: Removed doubly occuring disclaimer in testsuite files in fragmentation.
      Huge warning fix.
      Fixed some boost serialization static warnings.
      FIX: disabled levmar no longer pulls in fortran compiler requirement.
      FIX: Added/corrected levmar and jobmarket messages in configure.
      FIX: python regression test BoxMaker did not check for 'units'.
      FIX: Fix typo in error msg of FillRegularGridAction.
      FIX: Newly created default atom has element hydrogen.
      TESTFIX: regression test load-session uses python scripts in pre.
      FIX: WorldTime's dstor is now virtual.
      FIX: CommandLineWindow::display() did not use present ActionQueue ref.
      FIX: Implemented VersionAction.
      FIX: MPQCDataFragmentMap_t can be summed up in FragmentationShortRangeResults already.
      Added sensible default values to MolecularDynamics sequence of Actions.
      FIX: Process's getters are now const member functions.
      OptionRegistry is now filled by ActionRegistry() not by Action's cstors.
      Actions can now clone() and split off prepare() from call().
      Renamed ActionsQueue's queue -> actionqueue.
      SpecificFragmentController has a ref to an updatehandler to call in case of new results.
      Transformed FragmentationAutomationAction into a Process.
      Allow setting of invalid values in Value class, Action::performCall() catches ParameterExceptions.
      Replaced Reactions by simple function exported to pyMoleCuilder.
      Added ActionQueue::insertAction().
      ActionQueue now contains a run thread.
      Added --disable-action-thread to allow disabling of extra run thread.
      Enhanced documentation significantly.
      Added largely extended userguide with some images into subfolder of doc folder.
      Set version to 1.4.5.

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