[Molecuilder-devel] [SCM] MoleCuilder branch GUI_TesselatedLargeMolecules created. v1.4.9-25-g4f2895f

Thu Jan 15 14:32:34 CET 2015

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The branch, GUI_TesselatedLargeMolecules has been created
        at  4f2895fe90439ea317f5f52995da2eaa9bd4aac7 (commit)

- Log -----------------------------------------------------------------
commit 4f2895fe90439ea317f5f52995da2eaa9bd4aac7
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Jan 9 12:24:22 2015 +0100

    FIX: World::SetTime() erased molecules twice.

    - once in SetTime() and then again in DFS.Update...().

commit 066442d357f0a016de2922eff675320398a5ba17
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Dec 19 17:37:33 2014 +0100

    Added TranslateMolecule action.

    - added translate-molecule to userguide.
    - added translate-miolecule regression tests.
    - TranslateAtoms now has extra option position.

commit a84e8d0ab1d22d7db69a2ac4a869d411549a066b
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Dec 19 17:45:44 2014 +0100

    Added Push/PopMolecules selection action.

    - added push-molecule to userguide.
    - added regression tests to Push/PopMoleculeSelection.

commit 3213f29e16ba9cf8c7dc57a7343907df2ec3988a
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Dec 19 17:37:06 2014 +0100

    Added Push/PopAtom selection actions.

    - added push-atom to userguide.
    - added regression tests to Push/PopAtomsSelection.

commit cad38353d3b80b389bc34215a1350cc486705ef7
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Sun Dec 14 20:32:31 2014 +0100

    Added push/pop[Atoms|Molecules]Selection to World.

    - this is mostly convenience for MakroActions to use selections and still keep
      the selection from the user.

commit 2440cedf30e76a68e8eff1d2567f19c1b9e114ca
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Jan 14 21:31:24 2015 +0100

    FIX: Changed SuspendInMoleculeAction to catch segfault when rho=1 was given.

    - however, the action is still not tested to work.
    - TESTFIX: suspend-in-water gets parameter density via "density" not via
      "suspend-in-water", set desired density to faulting 1 for the moment.
    - TESTFIX: added water molecule to test.conf, to have at least two molecules.

commit 601ef8103d4e9e074f5fdcf17ea01dec9372e95f
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Sun Dec 14 20:10:19 2014 +0100

    FIX: ActionQueue is no longer cleared when Action fails.

    - we only remove the present and all following Actions.
    - also cleaned up threaded/non-threaded parts of ActionQueue: CurrentAction,
      tempQueue is solely used in threaded part.

commit 33c97e84dae27f29caf454929853623b09c497bb
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Sun Dec 14 19:15:47 2014 +0100

    FIX: Failing Actions do not clear ActionQueue/History anymore.

commit 52cd7bb206bec24c016935f40237d8c5102ab6aa
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Dec 12 21:38:29 2014 +0100

    FIX: Bonds from new molecules are instantiated, too.

    - when filling in molecules, initially empty molecules are created and atoms
      added lateron. Added atoms would not add their already present atoms but
      only new ones via an Observer update. Now when an atom is inserted, all
      bonds if any are added.

commit c01fec6a0c349cdec638b991086b581c75b3eccc
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Dec 12 19:41:27 2014 +0100

    Undo/Redobuttons are grayed out when respective Action not possible.

commit 867473fc81f5f56ef4a2749de5a2256f208084b8
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Dec 12 18:29:46 2014 +0100

    Added new RemoveAction for molecules.

    - also add regression test.
    - added remove-molecule to userguide.

commit 596cfa877bf5ca9866344e3bf0623e4704009c17
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Dec 12 09:28:58 2014 +0100

    Extended UndoRedoHelpers by AddingMultipleMoleculesfromAtomicInfo.

commit d7cad13fbfec0974d4bd77f1cbca6c59fac0ad61
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Dec 12 09:28:30 2014 +0100

    Extended selection action for Molecule ids to multiple ids.

commit b6d92e374e7b56b8a8b8399faf64a7363294d1b4
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Sat Dec 6 00:06:53 2014 +0100

    GLWorldView's view may be changed via keyboard (especially zoom).

    - Zoom and keys distance change scaled by eye-center distance.

commit f115ccd1f9b646866bddc9583360ebb5e27593b9
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Dec 3 23:15:42 2014 +0100

    For GLMoleculeObject_atom element and position are only reset..() on hook'ed in draw().

    - similarly as with GLMoleculeObject_molecule, we check in draw() when need to
      reset..() and do it before the actual drawing. This speeds up a lot.

commit a7aebd81a7ffd4f46af11dbf5e777b8833c831cf
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Dec 3 20:20:31 2014 +0100

    World removes empty molecules.

    - on destroyAtom() of molecule's last atom, destroyMolecule() is called.
    - FIX: destroyMolecule(molecule *) did use OBSERVE unncessarily. This caused
      seg'fault.
    - extracted removeAtomsinMolecule from molecule class. This is necessary since
      World will automatically remove empty molecules.

commit 7b93f9dad1f3a6bad5e0303472273227cebbcc50
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Nov 18 20:52:44 2014 +0100

    Added MeshFreeType to GLMoleculeObject.

commit 3eb91c4b2479f25056f44fbdb7275387992fccea
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Sun Nov 16 17:31:35 2014 +0100

    Molecule's Visibility can be changed "group-wise".

    - FIX: Removed this funny clear() on update() signal. Also using notifications
      now, which appear less often.

commit 9a7ef90a4cc774b21092647cb1d743b0a756dbb6
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Nov 12 23:35:35 2014 +0100

    Molecules can be (un)selected by clicking on the tesselation hull.

commit 2b596f94d8d4eaae7f603d8c5e7e9546cc3cfe3f
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Nov 12 23:26:05 2014 +0100

    Hovering over molecules is working including update of QtInfoBox.

    - SelectionBox is drawn again when molecule is fully shown.

commit 7b59843c6e0fcf96629146aac977053a6deaab43
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Nov 12 20:01:33 2014 +0100

    GLMoleculeObject_molecule listens to AtomMoved signal to update hull only when necessary.

commit c32d21acd3e47b463b8a5f9dc56fe34113509f73
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Nov 12 19:14:17 2014 +0100

    Molecule relays atom's PositionChanged as AtomMoved signal.

    - this allows to update tesselation hull only when something changed.

commit 34e7fdbe244fe3d4cc7ffaf1162683ab8c7eff45
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Nov 6 00:22:55 2014 +0100

    GLMoleculeObject_molecule display tesselated surface in m_visible case.

    - set TesselationHull radius to 2., independent of mol's bounding sphere.
    - added bool to indicate when subjectKilled() had been called.

commit 739ee9365702db570a88ff6eecfa0f87be1ec93b
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Nov 5 23:00:40 2014 +0100

    GLMoleculeObject have m_visible, settable in QtMoleculeList.

    - is connected via QtMainWindow an GLWorldView, GLWorldScene.
    - i.e. molecule's atoms and bond display can now be switched on and off.

commit 8c001aeb40538cff3bf30540d0cc0b8359472d75
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Nov 5 20:19:42 2014 +0100

    GLMoleculeObject_atoms and .._bonds are now children of .._molecule.

    - GLMoleculeObject::initialize() is now virtual.
    - .._molecule is now draw()ing its children, i.e. initialize() of .._molecule
      calls in turn those of .._atom and .._bond. Similarly with draw.
    - molecule has a lastchangedatom member variable now.
    - FIX: molecule::getBoundingSphere() did not check for no atoms.

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