[Molecuilder-devel] [SCM] branch Remove_CodeMountain created. v1.5.1-183-gdb5b62b

Tue Apr 12 21:55:51 CEST 2016

This is an automated email from the git hooks/post-receive script. It was
generated because a ref change was pushed to the repository containing
the project "".

The branch, Remove_CodeMountain has been created
        at  db5b62be350d560359d5ed4c61d5564d0a12f9e9 (commit)

- Log -----------------------------------------------------------------
commit db5b62be350d560359d5ed4c61d5564d0a12f9e9
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 21:55:27 2016 +0200

    FIX: Empty row in QtMoleculeList was not deleted.

commit 481d35038d88e8b494c0b15afbcaba23f02318da
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 21:21:00 2016 +0200

    FIX: MoleculeList crashed when selected molecule changed its place.

commit cbb1cd51deb237b9dd73d41feadeced76bacb746
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 20:37:31 2016 +0200

    GLWorldScene can now reparent atoms and bonds whose molecule is instantiated later.

    - parent maps are now bimaps.

commit e4119090a73297fbaa658f30a697186109b2719d
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 20:19:47 2016 +0200

    GLWorldScene's parent maps now store the parent as ObservedValue_Index_t.

    - this will allow to change them into a bimap and then browse through them with
      the index of a newly instantiated GLMoleculeObject_molecule in order to
      assign them a proper parent.

commit 37573909b06d90d591605bf3aa04640369b099cd
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 20:17:46 2016 +0200

    FIX: QtMoleculeList should not use getIdtoIndex unnecessarily.

    - this function is only meant to be used in interaction with the user, i.e.
      while the GUI does not change.

commit 451927dc065807694556a73a37cc9abe30635fb6
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 20:16:30 2016 +0200

    QtObservedMolecule uses fixed index which it returns.

commit aa06bbe71817d31a62ac07a6d4446fdca69fe6db
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 20:16:22 2016 +0200

    QtObservedBond uses fixed index which it returns.

commit fdb53f7f1ec8a38d0213e18ee37e20fb07388e6b
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 20:16:13 2016 +0200

    QtObservedAtom uses fixed index which it returns.

commit b87ba04c73d9cf42da6b4bbda37c9b6ab86ce725
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 16:35:58 2016 +0200

    tempcommit: Merge with 086f051e

commit 825c7ed3596e1d94cc5b4f27102455e4647a6b97
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 16:32:13 2016 +0200

    FIX: made disconnect() check for NULL pointers.

commit 0dec7b4f1d13295865b51f8d111a13a12f1a19bc
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 16:24:10 2016 +0200

    FIX: GLMoleculeObject_molecule only updates tesselation hull when necessary.

commit 2d19c3f7418a8c13efd4d6e93dddc7db94df5750
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 16:16:14 2016 +0200

    tempcommit: Merge with 782db0ab

commit eea78c0d7166e3637206212ba13e3f9a6dd47574
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 16:14:04 2016 +0200

    tempcommit: Merge with 086f051e

commit 17ba709f275827ed7424859e673696da75b6a8e1
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 16:13:25 2016 +0200

    tempcommit: Merge with 5aa9bdc9

commit c82b71e3278112dd2233ce092d1652a395bd03d4
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 16:01:47 2016 +0200

    tempcommit: Merge with 086f051ef

commit 822e7249d092c590282f19171e5416e65781b44b
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 15:56:01 2016 +0200

    tempcommit: Merge with d76f20fc

commit 0e0f07fb96d436b48feb009e0e0f7876a4381ef3
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 15:19:44 2016 +0200

    tempcommit: FIX: QtMoleculeList's FormulaVisibilityCountMap was not inserted into on new group item. Move below.

commit 074a06efd84ae97695e59ef673291c86ae60a6e5
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 15:19:02 2016 +0200

    tempcommit: Merge with 5520c7ce

commit c20b16de10cd11cac879cb42abb2b1bd73691bb8
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 14:54:58 2016 +0200

    tempcommit: Merge with 086f051

commit b7f2a1ffd7a93fe656b6b6c874c788bac4904d22
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 14:38:28 2016 +0200

    tempcommit: Merge with 5aa9bdc99

commit 086f051efc730d759ac49dfe9222ce188f6d7f8b
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 14:02:45 2016 +0200

    GLWorldScene now properly reassigns parents of GLMoleculeObjects.

    - this is important for atoms and bonds such that they disappear when their
      associated molecule is visualized as a tesselated surface.

commit d45a54dfa91ca1517177616966e6f68661b5762e
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 13:45:06 2016 +0200

    tempcommit: Merge with 5aa9bdc

commit d76f20fc5f2efb513f20aff1e080aff697b04ad2
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 13:29:56 2016 +0200

    QtObservedAtom only offers direct access to associated const QtObservedMolecule ref.

    - the molecule index is not part of the atom's state, hence cannot be directly
      observed. The only thing we observe is the association to the molecule. For
      this a O/O-signal is available and we may actively change the ref when
      getting this signal without breaking anything as it occurs in the same
      thread, hence the board can be safely accessed.
    - QtObservedBond now needs to access mol index through the molecule ref.
    - QtInfoBox may now conveniently access atom'smol ref directly.
    - FIX: Removed static QtObservedBond::getMolecule().

commit 5aa9bdc99f175dbcea82acb33fc241a6430a7238
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 13:19:05 2016 +0200

    QtObservedBond also offers direct access to stored QtObservedAtoms as const refs.

    - leftatom and rightatom are const throughout the lifetime of the bond. Hence,
      there is no need to update them and we simply store the refs directly. This
      will be different for the atom, where the molecule ref may change over the
      lifetime!

commit 782db0ab8866a1d0638b1c64d9e81af4f30fb401
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Apr 12 10:51:06 2016 +0200

    Only GLWorldScene creates stuff, GLMoleculeObject_.. are just visual reps.

commit ad2f411c1c7627389c5d337753a48b4a74d054f6
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Apr 7 18:14:04 2016 +0200

    FIX: QtObservedAtom: getAtomMolecule() -> getMoleculeIndex().

    - changed QtInfoBox and QtObservedBond::getMoleculeIndex() which used it.

commit 13fd92f7906e0b5e7a20a8d3e4025ef0523c1392
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Apr 7 18:10:42 2016 +0200

    tempcommit: Merge with 40595019

commit 64da96da774da113e4f19083f58694f06376faba
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Apr 7 18:10:30 2016 +0200

    tempcommit: Merge with bc661027

commit eed94790c1fa61e71584ef16a562ffae6f9f1340
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Apr 7 18:10:12 2016 +0200

    tempcommit: Merge with 40595019

commit ecfa6770a680537135a89bcd3ba760fba2bb5fd9
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Apr 7 18:09:25 2016 +0200

    tempcommit: Merge with bc661027

commit 3917d2223c179b9e7e42a0f0528c806f5dfe9763
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Apr 7 18:08:38 2016 +0200

    tempcommit: Merge with 40595019

commit 2eab9d414c6fa8b6b5dbe020bf1500836880e1ce
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Apr 7 18:08:15 2016 +0200

    tempcommit: Merge with e45f9d60

commit c83d065633a9f5e621ef896c2a7af5c8bd906997
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Apr 7 18:07:58 2016 +0200

    tempcommit: Merge with bc661027

commit 40595019c19b21f387a2f0d83e6aeed1f5a722a8
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Apr 6 19:04:01 2016 +0200

    QtObservedBond now simply gets both QtObservedAtoms on construction.

    - they must exist as QtObservedInstanceBoard is in the current update() loop.
    - and we don't need to take care of them and may throw them away when the bonf
      itself is removed. We don't need to care for anything else.

commit c6d729393932901b4f06cab29d8bee8c3fa3c8d8
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Mar 29 20:47:16 2016 +0200

    tempcommit: getObserved...() checks whether id is still present.

commit a8de5624542bbab15d7517a95ce0ee3bb66224e7
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Mar 29 16:56:56 2016 +0200

    tempcommit: MoleculeList discerns between internal and external name change. Move after 80d5f8c7f

commit 4c7dfb7e02507c01ce3454bb32ecd17da6b700b6
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Mar 29 16:54:47 2016 +0200

    tempcommit: Merge with e45f9d60

commit 23e92625c10c58235154c2c8e6e51cd5e59120a2
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Mar 29 16:53:56 2016 +0200

    tempcommit: Merge with e45f9d604

-----------------------------------------------------------------------

hooks/post-receive
-- 