From git at ins.uni-bonn.de  Fri Jan  8 17:06:52 2016
From: git at ins.uni-bonn.de (git at ins.uni-bonn.de)
Date: Fri,  8 Jan 2016 17:06:52 +0100 (CET)
Subject: [Molecuilder-devel] [SCM] branch Fix_QtGUI_crashes_continued
	created. v1.5.0-250-g0921907
Message-ID: <20160108160652.2C43F5FD6F@saturn.ins.uni-bonn.de>

This is an automated email from the git hooks/post-receive script. It was
generated because a ref change was pushed to the repository containing
the project "".

The branch, Fix_QtGUI_crashes_continued has been created
        at  0921907155034f939032245c16467eaab6889d87 (commit)

- Log -----------------------------------------------------------------
commit 0921907155034f939032245c16467eaab6889d87
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Jan 8 17:05:43 2016 +0100

    FIX: GLWorldScene now silently drops atomRemoved on missing molecules.
    
    - atomRemoved can never be the first state in the MoleculeMissedStateMap.
      Hence, we simply drop it. This may happen because moleculeRemoved comes from
      a different source, namely QtObservedInstanceMap, while the atomRemoved come
      from the QtObservedMolecule which tends to live longer than said signal.

commit ec321804292a97d34bb26587e3fe2b8b1a43e678
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Jan 8 16:41:41 2016 +0100

    tempcommit: no need to check shared_ptr on moleculeInserted, must be valid.

commit 2cdcb23f962770ee9cf471544c0581ec4c05a0b8
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Jan 8 15:22:15 2016 +0100

    tempcommit: Merge with ee50e14d

commit d0b888a94fb428bbcc757e67be14f47893a9fd4a
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Jan 8 15:16:45 2016 +0100

    tempcommit: Merge with ac2103d

commit 09a6c97709e0408e3e5b3fcc3845937a782b96d5
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Jan 8 14:53:48 2016 +0100

    tempcommit: Removed RefCounted..., see e57e681 and d078781

commit ac2103d29beb835e86df5fa9cd9e9d8ef7ac8174
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Jan 8 14:39:09 2016 +0100

    tempcommit: Removed lastmoleculeatomremoved.
    
    - this is possible since we only need atomid on atomRemoved and no longer the molecule.

commit db61f2172a50d2287def408b81b96a198ebcc4f1
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Jan 8 14:32:28 2016 +0100

    tempcommit: Merge with a9ea4c3

commit 9261a183d06b55cb6e1e021c14a69fa520466461
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Jan 8 14:32:14 2016 +0100

    Revert "FIX: QtObservedInstanceBoard needs to allow delayed atomInserted from World."
    
    This reverts commit cc163a44c3213da4172f9eac182a2c4b77bb5226.
    
    Conflicts:
    	src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp

commit a9ea4c30536ba2ff49144db73e6dc0876a0475e3
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Fri Jan 8 11:53:41 2016 +0100

    All ..Inserted/..Removed signals now go through GLWorldScene.
    
    - this should enforce synchronicity of the signals. If we mix direct and
      queued connections, then this cannot be ensured.
    - the idea is that GLWorldScene gets all Inserted/Removed signals for atoms and
      molecules from the QtObservedInstanceBoard. It connects to each
      QtObservedMolecule and thus can call the GLMoleculeObject_molecule's
      atomInserted, atomRemoved functions in sequence.
    - removed RemovalMolecules, no longer needed.
    - we now enforce with mutexes that instantation of molecule and MissedStateMap
      do not interfere, i.e. it is always perfectly clear whether to push a signal
      into the Map or whether to call the function of the present GLMolObj_mol.
    - FIX: MoleculesInScene_mutex has not been used properly, now is.
    - DOCU: Updated construct qt-gu documentation with the new concept.

commit 8a24dbd9cd64e15defe5cc225390da901df3e7bb
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 18:38:35 2016 +0100

    Revert "tempcommit: Using DirectConnection for atom/mol&Inserted/Removed in GLWorldScene."
    
    This reverts commit aefccd58536b7616bb4e51dd22617a08fb9d891a.

commit ddc5e15177eeb38b6816d7443d99dac43176c368
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 17:55:38 2016 +0100

    tempcommit: Merge with efd477f9

commit b21b5f47b6e96b21ee1e8025470f71a1ff4450c4
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 17:52:14 2016 +0100

    tempcommit: Making sure that new molecule is not already contained in MoleculesInSceneMap. Merge with ddf19b58

commit a19108d20bd3fc4a565fec5afbac157482a27831
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 17:51:24 2016 +0100

    tempcommit: Moved mutex locking to begin of GLWorldScene's atomInserted. Merge with 338e3a86

commit aefccd58536b7616bb4e51dd22617a08fb9d891a
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 17:50:54 2016 +0100

    tempcommit: Using DirectConnection for atom/mol&Inserted/Removed in GLWorldScene.

commit cec8e8a3e0446ef39961b9de5e6ea2f42129c310
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 17:50:07 2016 +0100

    DROPME?: Added mutex to GLMoleculeObject_molecule.
    
    - this is to ascertain atomic access to atomInserted/..Removed.

commit 74c6c813d6b4d2c251dd5c7f74565a85cb8594a8
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 17:48:51 2016 +0100

    FIX: GLMoleculeObject_.. does not care whether selection state did not change.
    
    - maybe we just got the event too late and actually two changes occured in
      between.

commit efd477f9d8864134247cc14138c659f0776f6671
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 17:47:51 2016 +0100

    tempcommit: FIX: indexChanged from QtObserved... transmit both old and new id. Move before 51d0c6 (~1)

commit 51d0c644310219d6d5ab884b74596ee6c2139bb3
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 13:00:38 2016 +0100

    FIX: Making sure that atomInserted is received from same source in GLWorldScene and GLMoleculeObject_molecule.
    
    - otherwise we cannot guarantee that the events are processed in order.

commit bbb87b0cf45b9a7a6fb0604d92e3ad9cbcaeb399
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 12:49:11 2016 +0100

    tempcommit: Merge with ddf19b58

commit 8a9950837f49dee03c8b757d5f974496a247e6db
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 12:34:29 2016 +0100

    tempcommit: Cstors of GLMoleculeObject_... now take ref of QtObserved..
    
    - this should avoid a copy.

commit fe7089e1ff5861b194ca4c826ab98c39cbd43719
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 11:54:03 2016 +0100

    tempcommit: Merge with 2d8c1fd

commit 5a566cf1a755228d132e41c20fe04594a6cc29e6
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 11:52:41 2016 +0100

    tempcommit: Also removed DirectConnection from atomInserted/..Removed in GLWorldScene.

commit e9f6499ca33d9ef38769c22f41af92684baeea67
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 11:39:05 2016 +0100

    Revert "tempcommit: GLWorldScene parses all signals as DirectConnection."
    
    This reverts commit f80eaaea3563b692eaa3e489f4b7061080a67972.

commit 2d8c1fde07672454df251161b276fe5f132cff12
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 11:28:10 2016 +0100

    QtObserved... now count the subjectKilled() from the containes values.
    
    - we no longer loop this through the ObservedValuesContainer.
    - also initObservedValues() is not longer a static function but now used inside
      the QtObserved..'s cstor.

commit 8843889c1ef190f0a24d3be6ad4380626240a0d4
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 10:58:49 2016 +0100

    tempcommit: GLWorldScene::moleculeInserted used while loop for unknown reasons.
    
    - was this meant to parse one state change after the other? Makes no sense if
      multiple changes are checked for cancellation and effectively only a single
      change is treated.

commit 7ba8e68ccd5a7bfd8e0c25ed3a021a48ee29a6e5
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 10:58:44 2016 +0100

    tempcommit: Merge with ddf19b58

commit f80eaaea3563b692eaa3e489f4b7061080a67972
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 10:56:32 2016 +0100

    tempcommit: GLWorldScene parses all signals as DirectConnection.
    
    - this should rid us of the problem that moleculeInserted is parsed far too
      late. Some time later me way want to split the function into two parts: one
      taking the direct connection and preparing the grounds and the latter
      function instantiating the visual representation, ...

commit d6eb80f3130f333ade51f2daf89295d87ee9b6d5
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 10:51:58 2016 +0100

    FIX: GLWorldScene did not remove all state changes but only last.
    
    - we multiple state changes cancelled each other we still only removed the
      first. This causes more atomRemoved.. than atomInsertedStates.

commit bc46986001df9dd2e61d7c4b92fbdcee2c9c0f50
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Thu Jan 7 10:50:53 2016 +0100

    tempcommit: Forgot to change QtMoleculeList::moleculeInserted slot to QtObservedMolecule::ptr.
    
    - this should go with the respective change to QtObservedInstanceBoard.

commit ddf19b58d1ac3930b454aa85911320a28cb74550
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Jan 6 18:34:22 2016 +0100

    tempcommit: QtObservedInstanceBoard now sends QtObserved..::ptr around in signals.
    
    - this should get rid of the problem that we need to keep the QtObservedAtom
      until it was requested at least once. And we don't know for how long. Now,
      we simply place the shared_ptr into the signal (to which it seems to be
      copied) and hence a representation of the atoms remains valid.

commit 3d2e92b0639205634206ea59e81d437de844fffc
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Jan 6 18:33:24 2016 +0100

    tempcommit: ObservedValuesContainer::get() returns NULL when not present.

commit 284abf83904e93341a889f76dc81e93d76218682
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Jan 6 18:12:57 2016 +0100

    tempcommit: Removed RequestedObjects from ObservedValuesContainer again.
    
    - this is no longer needed since we place the QtObserved... into the emitted
      signal of the QtObservedInstanceBoard.

commit a5689ef9efcc1f990761b481837e03460e140369
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Jan 6 18:11:16 2016 +0100

    tempcommit: Combined checks into checkRemoval() in ObservedValuesContainer.

commit 454b7a19cf7559fb3da1718904e728cbceba08f1
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Jan 6 09:36:58 2016 +0100

    tempcommit: DOCU: Updated Qt docu. Not complete yet, lacks QtObservedInstanceBoard.

commit 95f4a381105b7093a1ac773071f329b66b022f97
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Jan 5 23:26:38 2016 +0100

    FIX: Added mutex to ObservedValuesContainer to ensure atomic access.

commit 5b5d9eb7fb95441ebc7ac69e3ef894dd4bf08282
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Jan 5 23:24:44 2016 +0100

    tempcommit: QtInfoBox checks whether QtObserved... is not empty instance.

commit 9e3be15c587be3531b8a119782b3a1fc410f1057
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Jan 5 23:24:10 2016 +0100

    tempcommit: QtElementList must not use atom but only QtObservedAtom.

commit be638d204a999992573c887e23179a07a1c7630d
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Jan 5 23:22:56 2016 +0100

    CHECK: Don't admonish empty missed states in GLWorldScene?
    
    - skipped in subsequent loop anyway.

commit 70bf97f94e711c9cf3ababf78189ac26b86394fd
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Jan 5 23:22:13 2016 +0100

    tempcommit: GLMoleculeObject_atom and .._molecule don't get QtObserved... right away.
    
    - needs to be checked for empty instance first.

commit 3cd9923ab5c1a376ab5d1511e7dffba778f345ac
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Jan 5 23:20:13 2016 +0100

    CHECK: tempcommit: Removed Cacheable of TesselationHull for GLMoleculeObject_molecule.
    
    - this may cause hiccups with the observed instances with the O/O system and
      makes no sense anyway as it gets updated all the time?

commit 5392e2ba062445ba88fb6bed8402ec93ebb52995
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Jan 5 23:19:00 2016 +0100

    tempcommit: QtMoleculeList must not use QtObservedMolecules in lists but only request them on need.

commit dd31d1aa6043ad86163cd7ea9e9952e01c443cc4
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Jan 5 23:17:39 2016 +0100

    ObservedValuesContainer now asserts that observedinstance has been requested at least once before deletion.
    
    - this should prevent that the observed instance is instantiated and deleted
      before the signal has gotten through to the GUI.

commit 3e46781a8560df24014d0440462f7777ceb2f12f
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Jan 5 16:04:25 2016 +0100

    tempcommit: Merge with e57e6813

commit dcc0a282ed0c8e11eb1dc0fb2ce24ce72a95fb0a
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Jan 5 16:03:41 2016 +0100

    tempcommit: Merge with e228f3ba

commit e57e6813337f7b23f99230d3a8763799b039d3e8
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Dec 30 19:42:38 2015 +0100

    FIX: ObservesValuesContainer uses internal struct for two iterators for observedvalues.
    
    - we need these two additional iterators (apart from the deque) in order to
      step through the created instances one-by-one as they are expected in this
      manner by the QtGUI which, though lacking behind, is trying to process all
      the seen events.

commit d0787813dd4c36dbc270d9f829d4cc322177168b
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Dec 30 15:28:53 2015 +0100

    FIX: ObservedValuesContainer uses deque for internal observed values.
    
    - it may happen that an atom is created before the _visual representation_
      got destroyed (and hence it's QtObserved... would be destroyed). In that
      case the QtObservedInstanceBoard fails with an assertion.
    - Now, we use a deque. At the front end, we have all the observedvalues that
      have not yet been deleted, on the back end we have the observedvalues to
      the currently active instance.
    - removed unused getRefCount().

commit 90e83e6ae3a1184c1604d0f9b57513eccad8fe13
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Dec 30 13:38:20 2015 +0100

    tempcommit: QItemSelection could not be used in signal/slot. Merge with ???

commit b784d8eac83f9216d29184e613c047d2efa0a1d4
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Dec 30 12:14:14 2015 +0100

    tempcommit: Merge with ee50e14

commit c9a65da8e53c958bffa0e0dd0301f42580392b3c
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Dec 30 11:29:50 2015 +0100

    tempcommit: Merge with bbb2e1436e

commit 47fce732b348206cdd279110b80a200a7d271e7c
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Dec 30 11:19:37 2015 +0100

    tempcommit: SortIndex was introduced someplace else in .._ToFiles. Merge with 425b45f

commit f02d8aa8ff32ea14579c73582474fcde3c4f14b7
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Dec 30 11:19:10 2015 +0100

    Deleted MoleculeListClass.
    
    - finally ... some veeeery old legacy stuff is gone.

commit 06dbd0e6951d9520b418f6a079fdf76d60acc68b
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Dec 30 11:17:36 2015 +0100

    Removed molecules_deprecated from World.

commit 425b45f24dca7ce6c8b50b24d4f145f46e2359c1
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Dec 30 11:16:33 2015 +0100

    Replaced MoleculeListClass in ExportGraph by vector of molecules.
    
    - AddHydrogenCorrection did never really worked and is dropped (was commented
      out in .._ToFiles anyway).

commit bbb2e1436ea2ce70dc939e56012ce98d8cc9eb32
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Dec 30 11:06:45 2015 +0100

    Replaced MoleculeListClass in analysis_bonds by vector of molecules.
    
    - TESTFIX: also adapted CountBondsUnitTest.

commit 625b0bd95fbf61f686957ee83c4892ca4cc2b10a
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Dec 30 11:06:27 2015 +0100

    Removed FindEmbeddingHole which lacked implementation so far.

commit efb2ab366300483a625cbd87e9747993161be3a1
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Dec 30 11:02:58 2015 +0100

    Removed unnecessary includes of MoleculeListClass and all insert/erase.
    
    - this goes along the lines of removing "remove me when we don't need
      MoleculeCistClass anymore".

commit e7747c1446d44bfddbd892647a8c5398fad85ae5
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Dec 29 22:41:30 2015 +0100

    FIX: molecule's BoundingBoxSweepingAxis used unordered set of atomids.
    
    - this needs to be an ordered set to prevent O(N) access on updating values.

commit 32f4221997842b58e97cbb884e3073fda9f1b4ec
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Dec 29 20:50:22 2015 +0100

    Removed molecule's resetFormula() and doCountBonds() and doCountNoNonHydrogen().
    
    - we don't do these as Cacheables anymore.

commit ee50e14d4bad15fd8f511e5dc83c51e88ba77ae3
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Dec 29 20:49:43 2015 +0100

    Molecule now has maps with old values for bond counts and element number per atom.
    
    - this allows to update the total bond count and the formula in an
      O(N log N) fashion.

commit 533acaeb3eaf112a055991697406d5eaec3c0701
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Wed Dec 30 10:27:51 2015 +0100

    atom now uses associate... and disassociatedAtomWithMolecule().
    
    - this is used to gather all functions that need to be called when a new atom
      joins a molecule such as signing on to certain channels or updating certain
      internal values of the molecule.

commit 0e7426222c65c3cb0d9d2fb70f2bd2b89d51f8ab
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Dec 29 19:54:38 2015 +0100

    tempcommit: Merge with 46836ac8

commit 8de4f974c4e1dd56c55f7b30a489931ece3ff288
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Dec 29 16:10:47 2015 +0100

    tempcommit: Merge with 3944f4ad9

commit f6d54548592c9ac4b83a48ec5ccecc80412ddd13
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Dec 29 15:42:57 2015 +0100

    tempcommit: Removed AtomObserverStub. Does not work anymore with extracted EntityObserver?

commit e5be5106b616c4190b7d7cdcc891beeb8546803e
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Dec 29 15:25:41 2015 +0100

    tempcommit: Forget to change id also for atomInsertionDelayed. Merge with 2df80cf5

commit 7825d1e926534817c504ca4c8d11dd30fcc424fd
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Dec 29 15:25:06 2015 +0100

    FIX: We did not check for status of identifier change in QtObservedInstanceBoard.

commit 3944f4ad9190b7967cbdad05cab0ce97b751f39e
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Dec 29 15:23:09 2015 +0100

    Extracted common code out of Molecule/AtomObserver into EntityObserver.
    
    - also all channels are generated as a static vector via boost::assign.

commit 68046a88f814a8c567da09151090a56df88f993f
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Tue Dec 29 15:22:06 2015 +0100

    tempcommit: Merge with d7a4cc7bb1

commit 53f11445f7d82dc3b3c34adbfa7cb78876d243e1
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 21:10:33 2015 +0100

    tempcommit: Merge with 9bdc30e

commit bb0a2b836c413b7275b8a2be7b5d762aedaa6d78
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 20:24:17 2015 +0100

    tempcommit: Merge with d7a4cc7b

commit 3d0c8b30610f17285a317080851d9336bdc61c3a
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 20:20:43 2015 +0100

    Removed QtSelectionChangedAgent.
    
    - it is no longer used. We either listen to molecule/atom's selection changes
      directly or to all of them via the respective relay, i.e. MoleculeObserver.

commit 9cee1c7bc51140782c0a5d355943042911f0b292
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 20:20:00 2015 +0100

    tempcommit: Merge with 7d9de99

commit 46836ac8075ec7699d17d0c1af39aacd924ea26c
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 20:14:32 2015 +0100

    Removed QtSelectionAgent usage in QtMoleculeListView.
    
    - instead we subscribe to MoleculeObserver directly.

commit e3bfff68f39c14624901c6d26cfced4402cdc58a
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 20:04:29 2015 +0100

    tempcommit: Merge with 54dba3bc
    
    - its unit test now has NotifactionObservers for all AtomObservable's channels.

commit 7d9de99be2b7eed95bb9b49405f5b170f5accd37
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 18:12:08 2015 +0100

    Removed QtSelectionUsage in GLWorldView and related.
    
    - instead GLMoleculeObject_.. directly use observedvalue to get notified when
      they have been (un)selected.

commit d7a4cc7bb19e3e42672d55790eee6563fff79a23
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 16:10:47 2015 +0100

    Added MoleculeObserver as pendant to AtomObserver for molecules.

commit 54dba3bcb986874a7f6ca5eccedfc0a7e758a25d
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 16:09:49 2015 +0100

    FIX: AtomObserver was not up-to-date with respect to atom's channels.

commit 35ef43cb741160b28ec2e458e97d57564e410ddc
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 13:55:00 2015 +0100

    tempcommit: Merge with 1e7b36c8

commit 2c83658e75c3ce622f50c1f73966a442b120426d
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 12:43:34 2015 +0100

    Added ObservedValue for selection status of atoms and molecules to QtObserved...

commit 1e7b36c893acbf9ca5ad6c4be72fd5abf3798193
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 12:43:28 2015 +0100

    tempcommit: Added getSelected(). Merge with e6b6869

commit d3e4fe624daf76b20b270e668cfe6a53ee77cc50
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 11:27:48 2015 +0100

    tempcommit: Merge with 35263d2

commit de786b0a29b35bec4e79ade66a20736483a881c0
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 11:27:31 2015 +0100

    tempcommit: Merge with e6b68698

commit 35263d2f4d8f8ad0c81e4594cbb854e3b99f6a63
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 07:28:10 2015 +0100

    Added template functions to (un)set vector of instances in a row.

commit e6b68698280450e664581a05840810e4b7502c28
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 07:18:42 2015 +0100

    Added select() and unselect() functions to atom and molecule, also SelectionChanged channel.
    
    - this allows for more specific selection changs to be signalled.
    - this extends the current World's SelectionChanged channel that informs about
      selection changes by a more fine-grained/instance-specific change signalling.

commit b49bd2dbdcea884a28bcc4ced55601791976e169
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Mon Dec 28 07:15:14 2015 +0100

    Removed molecule's AboutToBeRemoved channel.

commit 9bdc30ea6b9d1015f27cfea2d815b9c05b7657e1
Author: Frederik Heber <heber at ins.uni-bonn.de>
Date:   Sun Dec 27 22:08:26 2015 +0100

    FIX: Fixed wrong paths for adjacency and trianglematcher in regression and GuiChecks tests.

-----------------------------------------------------------------------


hooks/post-receive
--